D. L. Chao, I. M. Longini Jr., and J. Glenn Morris Jr. Modeling cholera outbreaks. In G. Balakrish Nair and Yoshi Takeda, editors, Cholera Outbreaks. Current Topics in Microbiology and Immunology. In press.
doi:10.1007/82_2013_307

D. L. Chao. Modelling the global transmission of antiviral-resistant influenza viruses. Influenza and Other Respiratory Viruses. 7(Suppl 1):58-62. 2013.
doi:10.1111/irv.12043

L. Willem, K. Van Kerckhove, D. L. Chao, N. Hens, P. Beutels. A nice day for an infection? Weather conditions and social contact patterns relevant to influenza transmission. PLoS ONE 7(11): e48695. 2012.
doi:10.1371/journal.pone.0048695

D. L. Chao, S. B. Halstead, M. E. Halloran, and I. M. Longini Jr. Controlling dengue with vaccines in Thailand. PLoS Negl Trop Dis 6(10):e1876. 2012.
PubMed ID: 23145197
doi:10.1371/journal.pntd.0001876

D. L. Chao, J. D. Bloom, B. F. Kochin, R. Antia, and I. M. Longini Jr. The global spread of drug-resistant influenza. Journal of the Royal Society Interface. 9(69):648-56. 2012.
doi:10.1098/rsif.2011.0427

E. Kenah, D. L. Chao, L. Matrajt, M. E. Halloran, and I. M. Longini Jr. The global transmission and control of influenza. PLoS ONE. 6(5): e19515. 2011.
doi:10.1371/journal.pone.0019515

D. L. Chao, L. Matrajt, N. E. Basta, J. D. Sugimoto, B. Dean, D. A. Bagwell, B. Oiulfstad, M. E. Halloran, and I. M. Longini Jr. Planning for the control of pandemic influenza H1N1 in Los Angeles County and the United States. American Journal of Epidemiology. 173(10):1121--30. 2011.
doi:10.1093/aje/kwq497
[impact factor=5.589 (2009)]

D. L. Chao, M. E. Halloran, and I. M. Longini Jr. Vaccination strategies for epidemic cholera in Haiti with implications for the developing world. Proceedings of the National Academy of Sciences. 108(17):7081-5. 2011.
doi:10.1073/pnas.1102149108

P. Wang, D. L. Chao, and L. Hsu. Learning oncogenic pathways from binary genomic instability data. Biometrics. 67(1):164-73. 2011.
doi:10.1111/j.1541-0420.2010.01417.x

D. L. Chao, M. E. Halloran, and I. M. Longini Jr. School opening dates predict pandemic influenza A (H1N1) epidemics in the United States. The Journal of Infectious Diseases. 202(6):877-880. 2010.
doi:10.1086/655810

D. L. Chao, M. E. Halloran, V. Obenchain, and I. M. Longini Jr. FluTE, a publicly available stochastic influenza epidemic simulation model. PLoS Computational Biology, 6(1): e1000656. 2010.
doi:10.1371/journal.pcbi.1000656

Y. Yang, J. D. Sugimoto, M. E. Halloran, N. E. Basta, D. L. Chao, L. Matrajt, G. Potter, E. Kenah, I. M. Longini Jr. Transmissibility and control of pandemic influenza A (H1N1) virus. Science, 326(5953): 729-733. 2009.
doi: 10.1126/science.1177373

N. E. Basta, D. L. Chao, M. E. Halloran, L. Matrajt, I. M. Longini Jr. Strategies for pandemic and seasonal influenza vaccination of school children in the US. American Journal of Epidemiology, 170(6):679-686. 2009.
doi: 10.1093/aje/kwp237
[impact factor=5.589 (2009)]

T. G. Paulson, C. C. Maley, X. Li, H. Li, C. A. Sanchez, D. L. Chao, R. D. Odze, T. L. Vaughan, P. L. Blount, and B. J. Reid. Chromosomal instability and copy number alterations in Barrett's esophagus and esophageal adenocarcinoma. Clinical Cancer Research, 15(10):3305-14. 2009.
doi: 10.1158/1078-0432.CCR-08-2494
[impact factor=6.177 (2006)]

D. L. Chao, C. A. Sanchez, P. C. Galipeau, P. L. Blount, T. G. Paulson, D. S. Cowan, K. Ayub, R. D. Odze, P. S. Rabinovitch, and B. J. Reid. Cell proliferation, cell cycle abnormalities, and cancer outcome in patients with Barrett's esophagus: A long-term prospective study. Clinical Cancer Research, 14(21):6988-95. 2008.
doi: 10.1158/1078-0432.CCR-07-5063
[impact factor=6.177 (2006)]

D. L. Chao, J. T. Eck, D. E. Brash, C. C. Maley, and E. G. Luebeck. Pre-neoplastic lesion growth driven by the death of adjacent normal stem cells. Proceedings of the National Academy of Sciences, 105(39):15034-9. 2008.
doi: 10.1073/pnas.0802211105
[impact factor=9.598 (2007)]
(BibTex)
Faculty of 1000 Medicine evaluation
Nature Reviews Cancer note

P. C. Galipeau, D. L. Chao, X. Li, J. D. Arnaudo, H. D. Kissel, C. A. Sanchez, and B. J. Reid. Barrett's esophagus and esophageal adenocarcinoma epigenetic biomarker discovery using Infinium methylation. iCommunity Newsletter, Illumina, Inc., San Diego, CA, 2008.
(PDF)

R. M. Ribeiro, A. S. Perelson, D. L. Chao, and M. P. Davenport. HIV epidemiology and the impact of nonsterilizing vaccines. In Edited by R. P. Mondaini and Rui Dilão, editors, Proceedings of BIOMAT 2006: International Symposium on Mathematical and Computational Biology. pp 69-88. World Scientific Publishing, Singapore, 2007.

D. L. Chao, C. C. Maley, X. Wu, D. C. Farrow, P. C. Galipeau, C. A. Sanchez, T. G. Paulson, P. S. Rabinovitch, B. J. Reid, M. R. Spitz, and T. L. Vaughan. Mutagen sensitivity and neoplastic progression in patients with Barrett's esophagus: A prospective study. Cancer Epidemiology Biomarkers & Prevention, 15(10):1935-40. 2006.
doi: 10.1158/1055-9965.EPI-06-0492
[impact factor=4.289 (2006)]
(PDF, BibTex)

D. L. Chao, M. P. Davenport, S. Forrest, and A. S. Perelson. The effects of thymic selection on the range of T cell cross-reactivity. European Journal of Immunology, 35(12): 3452-9. 2005.
NIHMSID: NIHMS18092
doi: 10.1002/eji.200535098
[impact factor=4.876 (2005)]
(PDF, BibTex)

D. L. Chao, J. Balthrop, and S. Forrest. Adaptive Radio: Achieving consensus using negative preferences. In K. Schmidt, M. Pendergast, M. Ackerman, and G. Mark, editors, Group '05: Proceedings of the 2005 International ACM SIGGROUP Conference on Supporting Group Work. pp 120-3. ACM Press, New York, 2005.
doi: 10.1145/1099203.1099224
(PDF, BibTex)

M. P. Davenport, R. M. Ribeiro, D. L. Chao, and A. S. Perelson. Predicting the impact of a nonsterilizing vaccine against human immunodeficiency virus. Journal of Virology, 78(20):11340-51. 2004.
doi: 10.1128/JVI.78.20.11340-11351.2004
[impact factor=5.341 (2006)]
(PDF, BibTex)

D. L. Chao. Computer games as interfaces. interactions, 11(5): 71-2. 2004.
doi: 10.1145/1015530.1015567
(PDF, BibTex)

D. L. Chao. Modeling the cytotoxic T cell response. Ph.D. dissertation. The University of New Mexico Department of Computer Science, Albuquerque, NM, 2004.
(1-sided PDF, 2-sided PDF, BibTex)

D. L. Chao, M. P. Davenport, S. Forrest, and A. S. Perelson. A stochastic model of cytotoxic T cell responses. Journal of Theoretical Biology, 228(2): 227-40. 2004.
doi: 10.1016/j.jtbi.2003.12.011
[impact factor=1.96 (2005)]
(PDF, BibTex)

D. L. Chao, J. Balthrop, and S. Forrest. Adaptive Radio: Achieving consensus using negative preferences. Technical Report TR-CS-2004-08, The University of New Mexico Department of Computer Science, Albuquerque, NM, 2004.
(PDF, postscript)

D. L. Chao, M. P. Davenport, S. Forrest, and A. S. Perelson. Modelling the impact of antigen kinetics on T-cell activation and response. Immunology and Cell Biology, 82(1): 55-61. 2004.
doi: 10.1111/j.1440-1711.2004.01207.x
[impact factor=2.482 (2006)]
(PDF, BibTex)

D. L. Chao and S. Forrest. Information immune systems. Genetic Programming and Evolvable Machines, 4(4):311-31. 2003.
doi: 10.1023/A:1026139027539
(PDF, HTML, BibTex)

D. L. Chao, M. P. Davenport, S. Forrest, and A. S. Perelson. Stochastic stage-structured modeling of the adaptive immune system. Proceedings of the IEEE Computer Society Bioinformatics Conference (CSB 2003), pp 124-131. IEEE Press, Los Alamitos, California, 2003.
doi: 10.1109/CSB.2003.1227311
[28/151=18.5% acceptance rate]
(PDF, Postscript, gzipped postscript, Powerpoint slides, HTML, BibTex)

D. L. Chao and S. Forrest. Generating biomorphs with an aesthetic immune system. In R. Standish, M. A. Bedau, and H. A. Abbass, editors, Artificial Life VIII: Proceedings of the Eighth International Conference on the Simulation and Synthesis of Living Systems, pages 89-92. MIT Press, Cambridge, Massachusetts, 2003.
[32+35/89=75.3% acceptance rate for papers+short papers]
(PDF, Postscript, gzipped postscript, HTML, BibTex)

D. L. Chao and S. Forrest. Information immune systems. In J. Timmis and P. J. Bentley, editors, Proceedings of the First International Conference on Artificial Immune Systems, pages 132-40. University of Kent at Canterbury Printing Unit, Canterbury, England, 2002.
[26/34=76.5% acceptance rate]
(PDF, Postscript, gzipped postscript, HTML, BibTex)

D. L. Chao and P. D'haeseleer. The distribution of variable-length phatic interjectives on the world wide web. Technical Report TR-CS-2001-23, The University of New Mexico Department of Computer Science, Albuquerque, NM, 2001.
(gzipped postscript, HTML)

D. L. Chao. Doom as an interface for process management. In Proceedings of the SIGCHI Conference on Human Factors in Computing Systems (CHI Letters 3, 1), pages 152-7. ACM Press, New York, 2001.
doi: 10.1145/365024.365078
[19.5% acceptance rate]
(PDF, Postscript, gzipped postscript, HTML, BibTex)

D. L. Chao and S. A. Levin. Herding behavior: The emergence of large-scale phenomena from local interactions. In S. Ruan, G. S. K. Wolkowicz and J. Wu., editors, Differential Equations with Applications to Biology, Fields Institute Communications 21, pages 81-95. American Mathematical Society, Providence, RI, 1999.

D. Wagner, M. J. F. Brown, P. Broun, W. Cuevas, L. E. Moses, D. L. Chao, and D. M. Gordon. Task-related differences in the cuticular hydrocarbon composition of the harvester ant, Pogonomyrmex barbatus. Journal of Chemical Ecology, 24(12): 2021-37. 1998.
doi: 10.1023/A:1020781508889
[impact factor=2.03 (2005)]
(PDF, BibTex)

A. Pascovici, C. Li, J. Shu, and D. L. Chao. Ink reduction for cluster dot halftoning. In Proceedings of the 1997 IS&T/SPIE International Symposium on Electronic Imaging Science and Technology, volume 3018, pages 293-9, 1997.

Vaccination strategies for epidemic and endemic cholera control - Modeling approach. Considerations around introduction of a cholera vaccine in Bangladesh. Dhaka, Bangladesh. March 2013.

Modeling mass vaccination and other interventions: An individual-based approach. Disease Dynamics 2013: Immunization, a true multi-scale problem. Vancouver, Canada. January 2013. (Link to video)

Mathematical modeling of cholera outbreaks. Third Annual Africhol Consortium Meeting. Abidjan, Cote d'Ivoire. November 2012.

Modeling the transmission of influenza in the United States. Use of Influenza Disease Models To Quantitatively Evaluate the Benefits and Risks of Vaccines: A Technical Workshop. Bethesda, MD. August 2012.

Modeling the global circulation of influenza: Preliminary results. Facing the Challenge of Infectious Diseases. Courmayeur, Italy. January 2012.

Modelling of antiviral use and resistance emergence - implications for use. Influenza Antivirals: Efficacy and Resistance. Rio de Janeiro, Brazil. November 2011.

Modeling the spread of pandemic H1N1 in the United States: 2009 and beyond. Invited talk at ICCS 2010. May 2010.

Barrett's Oesophagus. Invited talk at Infección, Inflamación y Cáncer. Instituto de Investigaciones en Salud, Universidad de Costa Rica. November 2007.

D. L. Chao. Doom as a tool for system administration. Shown at the Institute for New Culture Technologies/t0 in Vienna as part of the exhibit Interface Explorer (Expanding the desktop). October 2001.

D. L. Chao. Color-patch sheet registration. U.S. Patent 6,404,517. Issued June 11, 2002.

C. Li, A. Pascovici, J. Shu, and D. L. Chao. On-line ink-duty reduction. U.S. Patent 5,799,136. Issued August 25, 1998.