D. L. Chao,
I. M. Longini Jr.,
and J. Glenn Morris Jr.
Modeling cholera outbreaks.
In G. Balakrish Nair and Yoshi Takeda, editors,
Cholera Outbreaks.
Current Topics in Microbiology and Immunology.
In press.
doi:10.1007/82_2013_307
D. L. Chao.
Modelling the global transmission of antiviral-resistant influenza viruses.
Influenza and Other Respiratory Viruses.
7(Suppl 1):58-62. 2013.
doi:10.1111/irv.12043
L. Willem, K. Van Kerckhove, D. L. Chao, N. Hens, P. Beutels.
A nice day for an infection? Weather conditions and social contact patterns relevant to influenza transmission.
PLoS ONE 7(11): e48695. 2012.
doi:10.1371/journal.pone.0048695
D. L. Chao,
S. B. Halstead,
M. E. Halloran, and
I. M. Longini Jr.
Controlling dengue with vaccines in Thailand.
PLoS Negl Trop Dis 6(10):e1876. 2012.
PubMed ID: 23145197
doi:10.1371/journal.pntd.0001876
D. L. Chao,
J. D. Bloom,
B. F. Kochin,
R. Antia, and
I. M. Longini Jr.
The global spread of drug-resistant influenza.
Journal of the Royal Society Interface. 9(69):648-56. 2012.
doi:10.1098/rsif.2011.0427
E. Kenah,
D. L. Chao,
L. Matrajt,
M. E. Halloran, and
I. M. Longini Jr.
The global transmission and control of influenza.
PLoS ONE.
6(5): e19515. 2011.
doi:10.1371/journal.pone.0019515
D. L. Chao,
L. Matrajt,
N. E. Basta,
J. D. Sugimoto,
B. Dean,
D. A. Bagwell,
B. Oiulfstad,
M. E. Halloran, and
I. M. Longini Jr.
Planning for the control of pandemic influenza H1N1 in Los Angeles County and the United States.
American Journal of Epidemiology. 173(10):1121--30. 2011.
doi:10.1093/aje/kwq497
[impact factor=5.589 (2009)]
D. L. Chao,
M. E. Halloran, and
I. M. Longini Jr.
Vaccination strategies for epidemic cholera in Haiti with implications for the developing world.
Proceedings of the National Academy of Sciences. 108(17):7081-5. 2011.
doi:10.1073/pnas.1102149108
P. Wang,
D. L. Chao,
and L. Hsu.
Learning oncogenic pathways from binary genomic instability data.
Biometrics.
67(1):164-73. 2011.
doi:10.1111/j.1541-0420.2010.01417.x
D. L. Chao,
M. E. Halloran, and
I. M. Longini Jr.
School opening dates predict pandemic influenza A (H1N1) epidemics in the United States.
The Journal of Infectious Diseases. 202(6):877-880. 2010.
doi:10.1086/655810
D. L. Chao,
M. E. Halloran,
V. Obenchain, and
I. M. Longini Jr.
FluTE, a publicly available stochastic influenza epidemic simulation model.
PLoS Computational Biology,
6(1):
e1000656. 2010.
doi:10.1371/journal.pcbi.1000656
Y. Yang, J. D. Sugimoto, M. E. Halloran, N. E. Basta, D. L. Chao, L. Matrajt, G. Potter, E. Kenah, I. M. Longini Jr.
Transmissibility and control of pandemic influenza A (H1N1) virus.
Science,
326(5953):
729-733. 2009.
doi: 10.1126/science.1177373
N. E. Basta, D. L. Chao, M. E. Halloran, L. Matrajt, I. M. Longini Jr.
Strategies for pandemic and seasonal influenza vaccination of school children in the US.
American Journal of Epidemiology,
170(6):679-686.
2009.
doi: 10.1093/aje/kwp237
[impact factor=5.589 (2009)]
T. G. Paulson,
C. C. Maley,
X. Li,
H. Li,
C. A. Sanchez,
D. L. Chao,
R. D. Odze,
T. L. Vaughan,
P. L. Blount, and
B. J. Reid.
Chromosomal instability and copy number alterations in Barrett's esophagus and esophageal adenocarcinoma.
Clinical Cancer Research, 15(10):3305-14. 2009.
doi: 10.1158/1078-0432.CCR-08-2494
[impact factor=6.177 (2006)]
D. L. Chao, C. A. Sanchez, P. C. Galipeau, P. L. Blount, T. G. Paulson, D. S. Cowan, K. Ayub, R. D. Odze, P. S. Rabinovitch, and B. J. Reid.
Cell proliferation, cell cycle abnormalities, and cancer outcome in patients with Barrett's esophagus: A long-term prospective study.
Clinical Cancer Research, 14(21):6988-95. 2008.
doi: 10.1158/1078-0432.CCR-07-5063
[impact factor=6.177 (2006)]
D. L. Chao, J. T. Eck, D. E. Brash, C. C. Maley, and E. G. Luebeck.
Pre-neoplastic lesion growth driven by the death of adjacent normal stem cells.
Proceedings of the National Academy of Sciences, 105(39):15034-9. 2008.
doi: 10.1073/pnas.0802211105
[impact factor=9.598 (2007)]
(BibTex)
Faculty of 1000 Medicine evaluation
Nature Reviews Cancer note
P. C. Galipeau, D. L. Chao, X. Li, J. D. Arnaudo, H. D. Kissel, C. A. Sanchez, and B. J. Reid. Barrett's esophagus and esophageal adenocarcinoma epigenetic biomarker discovery using Infinium methylation. iCommunity Newsletter, Illumina, Inc., San Diego, CA, 2008.
(PDF)
R. M. Ribeiro, A. S. Perelson, D. L. Chao, and M. P. Davenport. HIV epidemiology and the impact of nonsterilizing vaccines.
In Edited by R. P. Mondaini and Rui Dilão, editors, Proceedings of BIOMAT 2006: International Symposium on Mathematical and Computational Biology. pp 69-88. World Scientific Publishing, Singapore, 2007.
D. L. Chao, C. C. Maley, X. Wu, D. C. Farrow, P. C. Galipeau, C. A. Sanchez, T. G. Paulson, P. S. Rabinovitch, B. J. Reid, M. R. Spitz, and T. L. Vaughan.
Mutagen sensitivity and neoplastic progression in patients with Barrett's esophagus: A prospective study.
Cancer Epidemiology Biomarkers & Prevention, 15(10):1935-40. 2006.
doi: 10.1158/1055-9965.EPI-06-0492
[impact factor=4.289 (2006)]
(PDF, BibTex)
D. L. Chao,
M. P. Davenport,
S. Forrest,
and A. S. Perelson.
The effects of thymic selection on the range of T cell cross-reactivity.
European Journal of Immunology,
35(12): 3452-9.
2005.
NIHMSID: NIHMS18092
doi: 10.1002/eji.200535098
[impact factor=4.876 (2005)]
(PDF,
BibTex)
D. L. Chao, J. Balthrop, and
S. Forrest.
Adaptive Radio: Achieving consensus using negative preferences.
In K. Schmidt, M. Pendergast, M. Ackerman, and G. Mark, editors,
Group '05:
Proceedings of the 2005 International ACM SIGGROUP Conference on Supporting Group Work.
pp 120-3.
ACM Press, New York, 2005.
doi: 10.1145/1099203.1099224
(PDF,
BibTex)
M. P. Davenport, R. M. Ribeiro, D. L. Chao, and A. S. Perelson.
Predicting the impact of a nonsterilizing vaccine against human immunodeficiency virus.
Journal of Virology,
78(20):11340-51.
2004.
doi: 10.1128/JVI.78.20.11340-11351.2004
[impact factor=5.341 (2006)]
(PDF,
BibTex)
D. L. Chao. Computer games as interfaces.
interactions,
11(5): 71-2.
2004.
doi: 10.1145/1015530.1015567
(PDF,
BibTex)
D. L. Chao. Modeling the cytotoxic T cell response.
Ph.D. dissertation.
The University of New Mexico
Department of Computer Science,
Albuquerque, NM, 2004.
(1-sided PDF,
2-sided PDF,
BibTex)
D. L. Chao,
M. P. Davenport,
S. Forrest,
and A. S. Perelson.
A stochastic model of cytotoxic T cell responses.
Journal of Theoretical Biology,
228(2): 227-40. 2004.
doi: 10.1016/j.jtbi.2003.12.011
[impact factor=1.96 (2005)]
(PDF,
BibTex)
D. L. Chao, J. Balthrop, and
S. Forrest.
Adaptive Radio: Achieving consensus using negative preferences.
Technical Report TR-CS-2004-08,
The University of New Mexico
Department of Computer Science,
Albuquerque, NM, 2004.
(PDF,
postscript)
D. L. Chao,
M. P. Davenport,
S. Forrest,
and A. S. Perelson.
Modelling the impact of antigen kinetics on T-cell activation and response.
Immunology and Cell Biology, 82(1): 55-61. 2004.
doi: 10.1111/j.1440-1711.2004.01207.x
[impact factor=2.482 (2006)]
(PDF,
BibTex)
D. L. Chao and S. Forrest.
Information immune systems.
Genetic Programming and Evolvable Machines,
4(4):311-31. 2003.
doi: 10.1023/A:1026139027539
(PDF,
HTML,
BibTex)
D. L. Chao,
M. P. Davenport,
S. Forrest,
and A. S. Perelson.
Stochastic stage-structured modeling of the adaptive immune system.
Proceedings of the
IEEE Computer Society Bioinformatics Conference (CSB 2003),
pp 124-131.
IEEE Press,
Los Alamitos, California, 2003.
doi: 10.1109/CSB.2003.1227311
[28/151=18.5% acceptance rate]
(PDF,
Postscript,
gzipped postscript,
Powerpoint slides,
HTML,
BibTex)
D. L. Chao and S. Forrest.
Generating biomorphs with an aesthetic immune system.
In R. Standish, M. A. Bedau, and H. A. Abbass, editors,
Artificial Life VIII:
Proceedings
of the
Eighth International Conference on the Simulation and Synthesis of Living Systems,
pages 89-92.
MIT Press,
Cambridge, Massachusetts,
2003.
[32+35/89=75.3% acceptance rate for papers+short papers]
(PDF,
Postscript,
gzipped postscript,
HTML,
BibTex)
D. L. Chao and S. Forrest.
Information immune systems.
In J. Timmis and P. J. Bentley, editors,
Proceedings of the
First International Conference on Artificial Immune Systems,
pages 132-40.
University of Kent at Canterbury Printing Unit,
Canterbury, England,
2002.
[26/34=76.5% acceptance rate]
(PDF,
Postscript,
gzipped postscript,
HTML,
BibTex)
D. L. Chao and P. D'haeseleer.
The distribution of variable-length phatic interjectives on the world wide web.
Technical Report TR-CS-2001-23,
The University of New Mexico
Department of Computer Science,
Albuquerque, NM, 2001.
(gzipped postscript,
HTML)
D. L. Chao.
Doom as an interface for process management.
In
Proceedings
of the
SIGCHI Conference on Human Factors in Computing Systems
(CHI Letters 3, 1), pages 152-7. ACM Press, New York, 2001.
doi: 10.1145/365024.365078
[19.5% acceptance rate]
(PDF,
Postscript,
gzipped postscript,
HTML,
BibTex)
D. L. Chao and S. A. Levin.
Herding behavior: The emergence of large-scale phenomena from local interactions.
In S. Ruan, G. S. K. Wolkowicz and J. Wu., editors,
Differential Equations with Applications to Biology, Fields Institute Communications 21,
pages 81-95.
American Mathematical Society, Providence, RI, 1999.
D. Wagner, M. J. F. Brown, P. Broun, W. Cuevas, L. E. Moses, D. L. Chao, and D. M. Gordon.
Task-related differences in the cuticular hydrocarbon composition of the harvester ant, Pogonomyrmex barbatus.
Journal of Chemical Ecology, 24(12): 2021-37. 1998.
doi: 10.1023/A:1020781508889
[impact factor=2.03 (2005)]
(PDF,
BibTex)
A. Pascovici, C. Li, J. Shu, and D. L. Chao.
Ink reduction for cluster dot halftoning.
In Proceedings of the 1997 IS&T/SPIE International Symposium on Electronic Imaging Science and Technology, volume 3018, pages 293-9, 1997.