P. C. Galipeau, D. L. Chao, X. Li, J. D. Arnaudo, H. D. Kissel, C. A. Sanchez, and B. J. Reid. Barrett's esophagus and esophageal adenocarcinoma epigenetic biomarker discovery using Infinium methylation. iCommunity Newsletter, Illumina, Inc., San Diego, CA, 2008.
(PDF)

R. M. Ribeiro, A. S. Perelson, D. L. Chao, and M. P. Davenport. HIV epidemiology and the impact of nonsterilizing vaccines. In Edited by R. P. Mondaini and Rui Dilão, editors, Proceedings of BIOMAT 2006: International Symposium on Mathematical and Computational Biology. pp 69-88. World Scientific Publishing, Singapore, 2007.

D. L. Chao, C. C. Maley, X. Wu, D. C. Farrow, P. C. Galipeau, C. A. Sanchez, T. G. Paulson, P. S. Rabinovitch, B. J. Reid, M. R. Spitz, and T. L. Vaughan. Mutagen sensitivity and neoplastic progression in patients with Barrett's esophagus: A prospective study. Cancer Epidemiology Biomarkers & Prevention, 15(10):1935-40. 2006.
doi: 10.1158/1055-9965.EPI-06-0492
[impact factor=4.289 (2006)]
(PDF, BibTex)

D. L. Chao, M. P. Davenport, S. Forrest, and A. S. Perelson. The effects of thymic selection on the range of T cell cross-reactivity. European Journal of Immunology, 35(12): 3452-9. 2005.
doi: 10.1002/eji.200535098
[impact factor=4.876 (2005)]
(PDF, BibTex)

D. L. Chao, J. Balthrop, and S. Forrest. Adaptive Radio: Achieving consensus using negative preferences. In K. Schmidt, M. Pendergast, M. Ackerman, and G. Mark, editors, Group '05: Proceedings of the 2005 International ACM SIGGROUP Conference on Supporting Group Work. pp 120-3. ACM Press, New York, 2005.
doi: 10.1145/1099203.1099224
(PDF, BibTex)

M. P. Davenport, R. M. Ribeiro, D. L. Chao, and A. S. Perelson. Predicting the impact of a nonsterilizing vaccine against human immunodeficiency virus. Journal of Virology, 78(20):11340-51. 2004.
doi: 10.1128/JVI.78.20.11340-11351.2004
[impact factor=5.341 (2006)]
(PDF, BibTex)

D. L. Chao. Computer games as interfaces. interactions, 11(5): 71-2. 2004.
doi: 10.1145/1015530.1015567
(PDF, BibTex)

D. L. Chao. Modeling the cytotoxic T cell response. Ph.D. dissertation. The University of New Mexico Department of Computer Science, Albuquerque, NM, 2004.
(1-sided PDF, 2-sided PDF, BibTex)

D. L. Chao, M. P. Davenport, S. Forrest, and A. S. Perelson. A stochastic model of cytotoxic T cell responses. Journal of Theoretical Biology, 228(2): 227-40. 2004.
doi: 10.1016/j.jtbi.2003.12.011
[impact factor=1.96 (2005)]
(PDF, BibTex)

D. L. Chao, J. Balthrop, and S. Forrest. Adaptive Radio: Achieving consensus using negative preferences. Technical Report TR-CS-2004-08, The University of New Mexico Department of Computer Science, Albuquerque, NM, 2004.
(PDF, postscript)

D. L. Chao, M. P. Davenport, S. Forrest, and A. S. Perelson. Modelling the impact of antigen kinetics on T-cell activation and response. Immunology and Cell Biology, 82(1): 55-61. 2004.
doi: 10.1111/j.1440-1711.2004.01207.x
[impact factor=2.482 (2006)]
(PDF, BibTex)

D. L. Chao and S. Forrest. Information immune systems. Genetic Programming and Evolvable Machines, 4(4):311-31. 2003.
doi: 10.1023/A:1026139027539
(PDF, HTML, BibTex)

D. L. Chao, M. P. Davenport, S. Forrest, and A. S. Perelson. Stochastic stage-structured modeling of the adaptive immune system. Proceedings of the IEEE Computer Society Bioinformatics Conference (CSB 2003), pp 124-131. IEEE Press, Los Alamitos, California, 2003.
doi: 10.1109/CSB.2003.1227311
[28/151=18.5% acceptance rate]
(PDF, Postscript, gzipped postscript, Powerpoint slides, HTML, BibTex)

D. L. Chao and S. Forrest. Generating biomorphs with an aesthetic immune system. In R. Standish, M. A. Bedau, and H. A. Abbass, editors, Artificial Life VIII: Proceedings of the Eighth International Conference on the Simulation and Synthesis of Living Systems, pages 89-92. MIT Press, Cambridge, Massachusetts, 2003.
[32+35/89=75.3% acceptance rate for papers+short papers]
(PDF, Postscript, gzipped postscript, HTML, BibTex)

D. L. Chao and S. Forrest. Information immune systems. In J. Timmis and P. J. Bentley, editors, Proceedings of the First International Conference on Artificial Immune Systems, pages 132-40. University of Kent at Canterbury Printing Unit, Canterbury, England, 2002.
[26/34=76.5% acceptance rate]
(PDF, Postscript, gzipped postscript, HTML, BibTex)

D. L. Chao and P. D'haeseleer. The distribution of variable-length phatic interjectives on the world wide web. Technical Report TR-CS-2001-23, The University of New Mexico Department of Computer Science, Albuquerque, NM, 2001.
(gzipped postscript, HTML)

D. L. Chao. Doom as an interface for process management. In Proceedings of the SIGCHI Conference on Human Factors in Computing Systems (CHI Letters 3, 1), pages 152-7. ACM Press, New York, 2001.
doi: 10.1145/365024.365078
[19.5% acceptance rate]
(PDF, Postscript, gzipped postscript, HTML, BibTex)

D. L. Chao and S. A. Levin. Herding behavior: The emergence of large-scale phenomena from local interactions. In S. Ruan, G. S. K. Wolkowicz and J. Wu., editors, Differential Equations with Applications to Biology, Fields Institute Communications 21, pages 81-95. American Mathematical Society, Providence, RI, 1999.

D. Wagner, M. J. F. Brown, P. Broun, W. Cuevas, L. E. Moses, D. L. Chao, and D. M. Gordon. Task-related differences in the cuticular hydrocarbon composition of the harvester ant, Pogonomyrmex barbatus. Journal of Chemical Ecology, 24(12): 2021-37. 1998.
doi: 10.1023/A:1020781508889
[impact factor=2.03 (2005)]
(PDF, BibTex)

A. Pascovici, C. Li, J. Shu, and D. L. Chao. Ink reduction for cluster dot halftoning. In Proceedings of the 1997 IS&T/SPIE International Symposium on Electronic Imaging Science and Technology, volume 3018, pages 293-9, 1997.

D. L. Chao. Barrett's Oesophagus. Invited talk at Infección, Inflamación y Cáncer. Instituto de Investigaciones en Salud, Universidad de Costa Rica. November 2007.

P. C. Galipeau, M. Bibikova, X. Li, D. L. Chao, C. A. Sanchez, K. L. Gunderson, and B. J. Reid. CpG methylation of 807 genes in patients with Barrett's esophagus. Poster at the AACR Annual Meeting. April 2007.

D. L. Chao, J. T. Eck, C. C. Maley, and E. G. Luebeck. Mutant clone growth driven by the death of adjacent normal cells. Poster at the Multiscale Modeling Consortium Meeting. April 2007.

D. L. Chao. Computational modeling of clonal expansion in epithelial tissues. Poster at Pathobiology of Cancer: The Edward A. Smuckler Memorial Workshop. July 2005.

M. P. Davenport, R. M. Ribeiro, D. L. Chao, and A. S. Perelson. Predicting the impact of non-sterilizing vaccines on the HIV epidemic. Oral presentation (by M. Davenport) at the AIDS Vaccine 2003 Conference. 2003.
(PDF abstract)

M. P. Davenport, D. L. Chao, R. M. Ribeiro, and A. S. Perelson. Predicting the ability of non-sterilizing vaccines to control the HIV epidemic. Poster presentation (by M. Davenport) at the Tenth Conference on Retroviruses and Opportunistic Infections. 2003.
(abstract)

D. L. Chao. A quantitative model of CTL responses and immunological memory. Invited talk at the University of New South Wales. December 17, 2002.

D. L. Chao. Doom as a tool for system administration. Shown at the Institute for New Culture Technologies/t0 in Vienna as part of the exhibit Interface Explorer (Expanding the desktop). October 2001.

D. L. Chao. Color-patch sheet registration. U.S. Patent 6,404,517. Issued June 11, 2002.

C. Li, A. Pascovici, J. Shu, and D. L. Chao. On-line ink-duty reduction. U.S. Patent 5,799,136. Issued August 25, 1998.